Variant report

Variant	rs11175941
Chromosome Location	chr12:40694399-40694400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10459264	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes]
rs10784485	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10784497	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10878299	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10878302	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10878336	0.85[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10878386	1.00[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10878452	0.85[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs11175793	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11175852	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11175902	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11175913	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11175959	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11175963	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11175964	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11176022	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11176052	0.80[JPT][hapmap]
rs11176053	0.80[JPT][hapmap]
rs11176195	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs11176261	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs11564183	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11836288	0.90[AMR][1000 genomes]
rs12314692	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12316801	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12426498	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs12426513	0.81[AMR][1000 genomes]
rs12426891	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17443407	0.92[JPT][hapmap]
rs17490817	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17490865	0.87[AMR][1000 genomes]
rs17492159	1.00[CEU][hapmap]
rs28365224	1.00[CEU][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28365238	1.00[CEU][hapmap]
rs3747891	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4318033	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56325408	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7133914	0.85[CEU][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7308720	1.00[CEU][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73101520	0.81[AMR][1000 genomes]
rs73108329	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73108339	0.82[EUR][1000 genomes]
rs73108368	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1042967	chr12:40629636-40710319	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40620800-40704200	Weak transcription	Esophagus	oesophagus
2	chr12:40622800-40708800	Weak transcription	Left Ventricle	heart
3	chr12:40640600-40727400	Weak transcription	Spleen	Spleen
4	chr12:40640600-40768200	Weak transcription	Pancreas	Pancrea
5	chr12:40656800-40746400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr12:40659600-40694600	Weak transcription	Psoas Muscle	Psoas
7	chr12:40659600-40711200	Weak transcription	Aorta	Aorta
8	chr12:40661600-40696400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr12:40673400-40713400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr12:40674400-40760400	Weak transcription	Lung	lung
11	chr12:40677000-40712200	Weak transcription	Fetal Muscle Leg	muscle
12	chr12:40679000-40696200	Weak transcription	Right Ventricle	heart
13	chr12:40679200-40699400	Weak transcription	Fetal Kidney	kidney
14	chr12:40680400-40709000	Weak transcription	Ovary	ovary
15	chr12:40681200-40763000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr12:40682000-40694400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr12:40684000-40697800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr12:40684000-40722600	Weak transcription	Colon Smooth Muscle	Colon
19	chr12:40684000-40722600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr12:40684000-40725000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr12:40687200-40765000	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr12:40689800-40694600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr12:40690400-40709200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr12:40692200-40695200	Strong transcription	Primary B cells from cord blood	blood
25	chr12:40692400-40711600	Weak transcription	Adipose Nuclei	Adipose
26	chr12:40692800-40695000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr12:40693000-40694400	Enhancers	A549	lung
28	chr12:40693400-40694600	Weak transcription	Liver	Liver
29	chr12:40694200-40695000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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