Variant report

Variant	rs11176084
Chromosome Location	chr12:66586236-66586237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:66578488..66580000-chr12:66585242..66587314,2	MCF-7	breast:
2	chr12:66585731..66587468-chr12:66593766..66595581,2	MCF-7	breast:
3	chr12:66578489..66581069-chr12:66583580..66586870,3	K562	blood:
4	chr12:66585658..66587971-chr12:66595834..66597554,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11176069	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176075	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11465939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1168743	1.00[ASN][1000 genomes]
rs11832980	0.86[EUR][1000 genomes]
rs11836532	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12297278	1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12311209	1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12312119	0.86[EUR][1000 genomes]
rs17102065	1.00[ASN][1000 genomes]
rs17102070	1.00[ASN][1000 genomes]
rs17102107	0.92[EUR][1000 genomes]
rs1797411	1.00[ASN][1000 genomes]
rs1921081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34557475	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56195926	0.86[EUR][1000 genomes]
rs58265032	0.86[EUR][1000 genomes]
rs61209657	0.86[EUR][1000 genomes]
rs61387333	0.92[EUR][1000 genomes]
rs61648127	0.86[EUR][1000 genomes]
rs726302	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7307195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73327332	0.86[EUR][1000 genomes]
rs73327334	0.86[EUR][1000 genomes]
rs7960539	1.00[ASN][1000 genomes]
rs7963270	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1049537	chr12:66403269-66606174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv541516	chr12:66547969-66596036	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv899215	chr12:66556960-66594134	Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	n/a
6	nsv899216	chr12:66563835-66716844	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv541517	chr12:66576953-66639823	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66583600-66589000	Weak transcription	Brain Substantia Nigra	brain
2	chr12:66583600-66589000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:66583600-66591400	Weak transcription	Osteobl	bone
4	chr12:66583800-66589000	Weak transcription	Placenta	Placenta
5	chr12:66583800-66593000	Weak transcription	Aorta	Aorta
6	chr12:66583800-66623400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:66584400-66588800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr12:66584600-66586400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr12:66585000-66590000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr12:66585000-66591000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr12:66585000-66591400	Weak transcription	Colon Smooth Muscle	Colon
12	chr12:66585200-66589000	Weak transcription	Right Ventricle	heart
13	chr12:66585400-66589200	Weak transcription	HUVEC	blood vessel
14	chr12:66585600-66586400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr12:66585600-66587200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr12:66585600-66587600	Weak transcription	Adipose Nuclei	Adipose
17	chr12:66585600-66587800	Weak transcription	Lung	lung
18	chr12:66585600-66589000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr12:66585600-66589000	Weak transcription	Left Ventricle	heart
20	chr12:66585600-66590400	Weak transcription	Esophagus	oesophagus
21	chr12:66585600-66590800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr12:66585600-66592000	Weak transcription	Right Atrium	heart
23	chr12:66585800-66586400	Enhancers	Fetal Lung	lung
24	chr12:66585800-66587400	Weak transcription	Spleen	Spleen
25	chr12:66585800-66587600	Weak transcription	GM12878-XiMat	blood
26	chr12:66585800-66589000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr12:66585800-66590200	Weak transcription	Fetal Kidney	kidney
28	chr12:66586000-66586400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr12:66586000-66587200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr12:66586000-66588800	Weak transcription	Stomach Mucosa	stomach
31	chr12:66586000-66589000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr12:66586000-66589000	Weak transcription	Gastric	stomach
33	chr12:66586000-66589600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr12:66586200-66587200	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr12:66586200-66587200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr12:66586200-66587400	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr12:66586200-66587400	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links