Variant report

Variant	rs11176650
Chromosome Location	chr12:67639364-67639365
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11836317	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12300918	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17103634	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17103637	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17103644	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17103646	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17103688	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17103691	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17103725	0.84[AMR][1000 genomes]
rs17184182	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17781591	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17781675	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1827235	0.84[AMR][1000 genomes]
rs3850600	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3850601	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs733642	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541524	chr12:67311057-67700349	Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1054111	chr12:67556780-67865542	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv899218	chr12:67612129-67643840	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67639200-67639800	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links