Variant report

Variant	rs11176774
Chromosome Location	chr12:67929249-67929250
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67920467..67922517-chr12:67927709..67929345,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10878628	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11176777	0.83[EUR][1000 genomes]
rs36001410	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4913250	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040339	chr12:67925018-67963239	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67919200-67933000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:67925200-67934800	Weak transcription	Gastric	stomach
3	chr12:67927000-67929400	Enhancers	NHDF-Ad	bronchial
4	chr12:67927000-67929600	Enhancers	HSMM	muscle
5	chr12:67927200-67929600	Enhancers	HMEC	breast
6	chr12:67927400-67929600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:67927600-67929400	Enhancers	Ovary	ovary
8	chr12:67927600-67929600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr12:67927600-67930400	Enhancers	Fetal Intestine Large	intestine
10	chr12:67927800-67930000	Enhancers	Stomach Mucosa	stomach
11	chr12:67928000-67929400	Enhancers	Fetal Stomach	stomach
12	chr12:67928000-67930200	Enhancers	Duodenum Mucosa	Duodenum
13	chr12:67928000-67930400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr12:67928400-67929800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr12:67928400-67929800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr12:67928400-67930000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr12:67928400-67930000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr12:67928400-67930000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr12:67928400-67930200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr12:67928400-67930400	Enhancers	Fetal Intestine Small	intestine
21	chr12:67928600-67929400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr12:67928600-67929400	Enhancers	Esophagus	oesophagus
23	chr12:67928600-67929400	Enhancers	Psoas Muscle	Psoas
24	chr12:67928600-67929600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr12:67928600-67929600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr12:67928600-67929600	Enhancers	Adipose Nuclei	Adipose
27	chr12:67928600-67929800	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr12:67928600-67930000	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr12:67928600-67930200	Enhancers	H1 Cell Line	embryonic stem cell
30	chr12:67928600-67930200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr12:67929000-67929600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr12:67929000-67933000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr12:67929000-67933600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr12:67929000-67933800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr12:67929000-67933800	Weak transcription	NHEK	skin
36	chr12:67929200-67933000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr12:67929200-67933200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr12:67929200-67934600	Weak transcription	NH-A	brain

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