Variant report

Variant	rs11176921
Chromosome Location	chr12:40898064-40898065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11176706	0.88[ASN][1000 genomes]
rs11176796	0.88[ASN][1000 genomes]
rs11176808	0.88[ASN][1000 genomes]
rs11176811	0.88[ASN][1000 genomes]
rs11176815	0.88[ASN][1000 genomes]
rs11176824	0.88[ASN][1000 genomes]
rs11176825	0.88[ASN][1000 genomes]
rs11176826	0.88[ASN][1000 genomes]
rs11176844	0.83[ASN][1000 genomes]
rs11176922	0.96[ASN][1000 genomes]
rs11564168	0.85[ASN][1000 genomes]
rs12368100	0.98[ASN][1000 genomes]
rs12822472	0.96[ASN][1000 genomes]
rs17492159	1.00[CHB][hapmap]
rs17520991	1.00[CHB][hapmap]
rs17531348	0.88[ASN][1000 genomes]
rs17597194	0.83[ASN][1000 genomes]
rs17597222	0.88[ASN][1000 genomes]
rs28365238	1.00[CHB][hapmap]
rs74076586	0.88[ASN][1000 genomes]
rs74076588	0.85[ASN][1000 genomes]
rs74076590	0.85[ASN][1000 genomes]
rs74076593	0.81[ASN][1000 genomes]
rs74079003	0.92[ASN][1000 genomes]
rs74079018	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40894800-40908600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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