Variant report

Variant	rs111769389
Chromosome Location	chr3:112054875-112054876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112050155..112051724-chr3:112053726..112056411,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000091972	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3413622	chr3:112054745-112055084	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112051800-112055400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:112052600-112062400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:112052600-112066400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:112052800-112076200	Weak transcription	Right Ventricle	heart
5	chr3:112053000-112056400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
6	chr3:112053000-112057200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr3:112053200-112062200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:112053200-112066400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:112053200-112076400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:112053400-112055800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr3:112053400-112057200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr3:112053400-112057600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:112053600-112056600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr3:112053800-112056200	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
15	chr3:112053800-112056200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:112053800-112056800	Weak transcription	HMEC	breast
17	chr3:112053800-112057000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:112053800-112057000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:112053800-112063800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:112053800-112064200	Weak transcription	Fetal Intestine Large	intestine
21	chr3:112054000-112055200	Enhancers	Fetal Intestine Small	intestine
22	chr3:112054000-112056400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:112054000-112057200	Enhancers	Adipose Nuclei	Adipose
24	chr3:112054000-112065800	Weak transcription	Fetal Kidney	kidney
25	chr3:112054000-112068600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:112054200-112055000	Genic enhancers	H1 Cell Line	embryonic stem cell
27	chr3:112054200-112055000	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
28	chr3:112054200-112055000	Flanking Active TSS	Fetal Brain Female	brain
29	chr3:112054200-112055000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr3:112054200-112055200	Weak transcription	Placenta	Placenta
31	chr3:112054200-112055400	Enhancers	Fetal Lung	lung
32	chr3:112054200-112055400	Enhancers	Fetal Stomach	stomach
33	chr3:112054200-112055800	Enhancers	Primary B cells from peripheral blood	blood
34	chr3:112054200-112056600	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr3:112054200-112063800	Weak transcription	Fetal Muscle Trunk	muscle
36	chr3:112054200-112064000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr3:112054400-112055400	Weak transcription	Colon Smooth Muscle	Colon
38	chr3:112054400-112055600	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
39	chr3:112054400-112056000	Enhancers	Thymus	Thymus
40	chr3:112054400-112056200	Enhancers	Aorta	Aorta
41	chr3:112054400-112056400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
42	chr3:112054400-112056600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:112054400-112058800	Genic enhancers	HUES48 Cell Line	embryonic stem cell
44	chr3:112054400-112059200	Weak transcription	Brain Substantia Nigra	brain
45	chr3:112054600-112055000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
46	chr3:112054600-112055400	Enhancers	H9 Cell Line	embryonic stem cell
47	chr3:112054600-112055400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:112054600-112055400	Enhancers	Brain Hippocampus Middle	brain
49	chr3:112054600-112055800	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr3:112054600-112056200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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