Variant report

Variant	rs11176974
Chromosome Location	chr12:68355815-68355816
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10878716	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11176982	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11176984	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11176988	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11176990	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2079582	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4141137	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4432092	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4913267	0.84[ASN][1000 genomes]
rs4913383	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4913384	0.85[AMR][1000 genomes]
rs4913385	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4913387	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7297625	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7299287	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7487518	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68351400-68356000	Weak transcription	Psoas Muscle	Psoas
2	chr12:68352200-68356200	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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