Variant report

Variant	rs11176996
Chromosome Location	chr12:68382182-68382183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10492202	0.95[EUR][1000 genomes]
rs10878704	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11176960	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11176962	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11176964	0.97[EUR][1000 genomes]
rs12578962	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4913375	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73324809	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1039638	chr12:68293351-68399871	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68381000-68382800	Enhancers	Primary B cells from peripheral blood	blood
2	chr12:68381400-68382800	Enhancers	Primary B cells from cord blood	blood
3	chr12:68381400-68383800	Enhancers	Primary hematopoietic stem cells	blood
4	chr12:68381800-68382200	Enhancers	GM12878-XiMat	blood
5	chr12:68381800-68382600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr12:68381800-68383200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr12:68381800-68383200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:68382000-68382600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr12:68382000-68382600	Enhancers	Small Intestine	intestine
10	chr12:68382000-68382800	Enhancers	Primary T cells from cord blood	blood
11	chr12:68382000-68383200	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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