Variant report
Variant | rs11177288 |
---|---|
Chromosome Location | chr12:40967139-40967140 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10083205 | 0.84[AFR][1000 genomes];0.88[EUR][1000 genomes] |
rs10784705 | 0.86[AFR][1000 genomes];0.83[EUR][1000 genomes] |
rs10878851 | 0.93[AFR][1000 genomes];0.97[EUR][1000 genomes] |
rs10878852 | 0.93[AFR][1000 genomes];0.95[EUR][1000 genomes] |
rs10878853 | 0.91[AFR][1000 genomes];0.96[EUR][1000 genomes] |
rs10878854 | 0.93[AFR][1000 genomes];0.97[EUR][1000 genomes] |
rs11177226 | 0.88[AFR][1000 genomes];0.87[EUR][1000 genomes] |
rs11177343 | 0.82[AFR][1000 genomes];0.91[EUR][1000 genomes] |
rs1602635 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs3751173 | 0.88[AFR][1000 genomes];0.85[EUR][1000 genomes] |
rs56080664 | 0.91[AFR][1000 genomes];0.88[EUR][1000 genomes] |
rs7303283 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7971126 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7972739 | 0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7974188 | 0.93[AFR][1000 genomes];0.95[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv899033 | chr12:40758652-41122288 | Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
2 | nsv832378 | chr12:40943111-41132305 | Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv683 | chr12:40951473-40996258 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr12:40947400-40967800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |