Variant report

Variant	rs111789399
Chromosome Location	chr1:57049399-57049400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:57044467..57046769-chr1:57047569..57049948,2	MCF-7	breast:
2	chr1:57043720..57045227-chr1:57047518..57050298,2	K562	blood:
3	chr1:55750125..55751076-chr1:57049065..57050023,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162407	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv528673	chr1:57048961-57059571	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57045400-57050800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:57045400-57051800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:57046000-57050200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:57046000-57050200	Weak transcription	Brain Angular Gyrus	brain
5	chr1:57046000-57050200	Weak transcription	Brain Hippocampus Middle	brain
6	chr1:57046000-57050400	Weak transcription	HSMM	muscle
7	chr1:57046000-57050800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:57046200-57050200	Weak transcription	Brain Substantia Nigra	brain
9	chr1:57046200-57050400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr1:57046200-57050400	Weak transcription	A549	lung
11	chr1:57046200-57051400	Weak transcription	Osteobl	bone
12	chr1:57046400-57050200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:57047200-57050200	Weak transcription	NHLF	lung
14	chr1:57047400-57050200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:57047600-57050200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:57047600-57050200	Weak transcription	Fetal Lung	lung
17	chr1:57047600-57050200	Weak transcription	HepG2	liver
18	chr1:57047600-57050200	Weak transcription	NHDF-Ad	bronchial
19	chr1:57047600-57050400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr1:57048000-57050200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:57048000-57050800	Weak transcription	Liver	Liver
22	chr1:57048000-57056000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:57049200-57050200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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