Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10879344	1.00[YRI][hapmap]
rs11179003	1.00[YRI][hapmap]
rs11179032	1.00[YRI][hapmap]
rs11179038	1.00[YRI][hapmap]
rs11179045	1.00[ASW][hapmap]
rs11179056	0.82[CHB][hapmap];0.96[CHD][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs11179065	1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11179066	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11834693	1.00[EUR][1000 genomes]
rs12230254	1.00[YRI][hapmap]
rs12231731	1.00[YRI][hapmap]
rs12580769	1.00[CEU][hapmap]
rs1484831	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1487282	1.00[EUR][1000 genomes]
rs1487285	1.00[EUR][1000 genomes]
rs41317114	0.81[EUR][1000 genomes]
rs4145228	1.00[EUR][1000 genomes]
rs4356276	0.91[EUR][1000 genomes]
rs57127604	1.00[EUR][1000 genomes]
rs57310160	1.00[EUR][1000 genomes]
rs58166063	0.91[EUR][1000 genomes]
rs58736070	1.00[EUR][1000 genomes]
rs59308240	1.00[EUR][1000 genomes]
rs60406413	1.00[EUR][1000 genomes]
rs60544627	0.91[EUR][1000 genomes]
rs60590439	1.00[EUR][1000 genomes]
rs61581169	1.00[EUR][1000 genomes]
rs61649811	1.00[EUR][1000 genomes]
rs61707416	1.00[EUR][1000 genomes]
rs7133320	0.81[EUR][1000 genomes]
rs7309440	0.81[EUR][1000 genomes]
rs7315855	1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73346812	1.00[EUR][1000 genomes]
rs73346836	0.81[EUR][1000 genomes]
rs73346837	0.95[EUR][1000 genomes]
rs7976603	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518498	chr12:72307616-72508779	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1054578	chr12:72307616-72509341	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv899256	chr12:72409548-72499323	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:72413200-72423200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:72417800-72420600	Enhancers	HMEC	breast
3	chr12:72420000-72436200	Weak transcription	Placenta Amnion	Placenta Amnion

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