Variant report
| Variant | rs11180257 |
|---|---|
| Chromosome Location | chr12:75248423-75248424 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:75242648..75245523-chr12:75247721..75249982,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs10161140 | 1.00[AMR][1000 genomes] |
| rs11180160 | 1.00[AMR][1000 genomes] |
| rs12306999 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12313717 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12319702 | 1.00[AMR][1000 genomes] |
| rs12320785 | 1.00[AMR][1000 genomes] |
| rs9325207 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9804917 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832460 | chr12:75082963-75260727 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv899299 | chr12:75105972-75275196 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv524456 | chr12:75162157-75405957 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv899303 | chr12:75174462-75291946 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv899305 | chr12:75186603-75275196 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv899306 | chr12:75186603-75291946 | Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 7 | nsv899307 | chr12:75221397-75479379 | Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 8 | nsv826438 | chr12:75247999-75248587 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:75245800-75252800 | Weak transcription | Pancreas | Pancrea |
