Variant report
| Variant | rs11180914 |
|---|---|
| Chromosome Location | chr12:41819016-41819017 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11180888 | 1.00[CEU][hapmap];0.82[EUR][1000 genomes] |
| rs11180898 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11180905 | 1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11180907 | 1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11180908 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11180912 | 1.00[CEU][hapmap];0.88[YRI][hapmap] |
| rs12296173 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12305552 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs12308926 | 1.00[CEU][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12312032 | 1.00[CEU][hapmap];0.90[YRI][hapmap] |
| rs12318761 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12321550 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12322196 | 1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs285585 | 1.00[CEU][hapmap] |
| rs4558215 | 1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74077600 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74078808 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74078810 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs74078819 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs987823 | 1.00[CEU][hapmap];0.90[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832383 | chr12:41693298-41846934 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 2 | nsv832384 | chr12:41772648-41971430 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv899037 | chr12:41777144-41819215 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 4 | esv2755020 | chr12:41780758-41820936 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv899038 | chr12:41784137-41819215 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 6 | nsv1037987 | chr12:41815867-41840251 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:41818000-41820600 | Enhancers | Pancreatic Islets | Pancreatic Islet |
