Variant report

Variant	rs11181201
Chromosome Location	chr12:42255366-42255367
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10161411	0.81[ASN][1000 genomes]
rs10491995	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10880171	0.94[ASN][1000 genomes]
rs10880172	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11181191	0.83[ASN][1000 genomes]
rs11181192	0.96[ASN][1000 genomes]
rs11181193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11181195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11181196	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11181197	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11181224	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11181225	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12049977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17090789	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17576220	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1811245	0.96[EUR][1000 genomes]
rs4768375	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3336599	chr12:42255175-42255641	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42218600-42257000	Weak transcription	Aorta	Aorta
2	chr12:42250600-42257400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:42250800-42255400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:42254800-42255400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr12:42254800-42255600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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