Variant report

Variant	rs11181576
Chromosome Location	chr12:42997878-42997879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11610812	0.88[YRI][hapmap]
rs12228904	0.84[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs17568121	0.87[YRI][hapmap]
rs2002123	0.95[JPT][hapmap]
rs55872396	0.84[ASN][1000 genomes]
rs7138732	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	nsv832388	chr12:42878328-43087069	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42991000-43001600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:42996000-42998000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:42996200-42998000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:42996200-42998000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr12:42996200-42998000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:42996400-42998000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:42996400-42998000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr12:42996600-42998200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr12:42996800-42998000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr12:42997600-43001400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:42997800-42998000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:42997800-42998000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr12:42997800-42999400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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