Variant report

Variant	rs11181691
Chromosome Location	chr12:43202066-43202067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:43201576..43204035-chr12:43205412..43207540,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2678120	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs7955978	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	nsv558749	chr12:43180190-43275097	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43193400-43203000	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr12:43196000-43203800	Weak transcription	Fetal Heart	heart
3	chr12:43197200-43202200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr12:43197200-43203000	Weak transcription	HSMMtube	muscle
5	chr12:43197200-43206800	Weak transcription	Psoas Muscle	Psoas
6	chr12:43197400-43203000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:43197400-43204200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:43198000-43202200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:43198800-43203200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:43199200-43203200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:43201000-43202600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr12:43201400-43202200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr12:43201400-43202200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:43201400-43202400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:43201600-43202400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr12:43201800-43202400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr12:43201800-43202600	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr12:43201800-43205400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr12:43201800-43207400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr12:43202000-43203000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:43202000-43205600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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