Variant report

Variant	rs111819453
Chromosome Location	chr11:71213488-71213489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:71210029..71213708-chr11:71213873..71217585,6	MCF-7	breast:
2	chr11:71212078..71213595-chr11:71215421..71217314,2	K562	blood:
3	chr11:71205951..71209347-chr11:71211780..71215363,4	MCF-7	breast:
4	chr11:71209374..71211618-chr11:71213015..71214853,2	K562	blood:

Variant related genes	Relation type
ENSG00000254924	Chromatin interaction
ENSG00000172890	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
2	nsv526973	chr11:71088949-71215880	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv897897	chr11:71088949-71217571	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
5	nsv519224	chr11:71108341-71215880	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv468632	chr11:71200320-71289089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv555402	chr11:71200320-71289089	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	esv3471041	chr11:71212614-71215837	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3471052	chr11:71212614-71215837	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv20567	chr11:71212774-71215694	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71165800-71218400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr11:71181400-71217800	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr11:71181800-71218000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:71182000-71217600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:71182200-71216000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:71182200-71216200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:71182200-71216200	Strong transcription	Rectal Mucosa Donor 31	rectum
8	chr11:71182200-71217800	Strong transcription	Primary T cells from cord blood	blood
9	chr11:71182400-71213800	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr11:71182400-71217200	Strong transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:71182400-71217600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:71182400-71217800	Strong transcription	Duodenum Mucosa	Duodenum
13	chr11:71182600-71213600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:71182800-71216400	Strong transcription	Stomach Smooth Muscle	stomach
15	chr11:71189800-71218400	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:71199400-71214600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:71199400-71215600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr11:71199600-71216400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr11:71199600-71218400	Strong transcription	Fetal Intestine Small	intestine
20	chr11:71200000-71215000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:71200000-71216000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:71200200-71216000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:71200200-71216400	Strong transcription	Primary B cells from peripheral blood	blood
24	chr11:71200200-71217400	Strong transcription	Fetal Intestine Large	intestine
25	chr11:71200400-71213800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:71200400-71216200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:71200400-71216400	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr11:71200800-71215400	Strong transcription	Placenta	Placenta
29	chr11:71200800-71216800	Weak transcription	Fetal Kidney	kidney
30	chr11:71201000-71214600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:71201000-71215200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:71201000-71216200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:71201200-71215400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:71201800-71216400	Strong transcription	Ovary	ovary
35	chr11:71203200-71215200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:71203400-71216800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:71205000-71214600	Strong transcription	Esophagus	oesophagus
38	chr11:71205200-71215600	Strong transcription	Colonic Mucosa	Colon
39	chr11:71205200-71215600	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:71205200-71216000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:71205800-71213600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:71206400-71213600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:71206400-71215400	Strong transcription	Aorta	Aorta
44	chr11:71207200-71215800	Strong transcription	Pancreas	Pancrea
45	chr11:71207800-71215400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:71207800-71215800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:71209400-71218800	Weak transcription	Small Intestine	intestine
48	chr11:71209600-71215200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr11:71210200-71217600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr11:71210400-71215200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links