Variant report

Variant	rs1118196
Chromosome Location	chr14:82741488-82741489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1026454	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12588076	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12879777	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12884363	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1457990	0.88[EUR][1000 genomes]
rs1457991	0.88[EUR][1000 genomes]
rs2219410	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34321869	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34536012	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs709903	0.80[AMR][1000 genomes]
rs799111	0.81[AMR][1000 genomes]
rs799112	0.81[AMR][1000 genomes]
rs799113	0.80[AMR][1000 genomes]
rs8015838	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052666	chr14:82069162-83028382	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:82737000-82745800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr14:82740400-82741600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:82740600-82741600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:82740600-82741800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr14:82740600-82741800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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