Variant report

Variant	rs11182338
Chromosome Location	chr12:44324397-44324398
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11182335	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11182344	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44311400-44324600	Weak transcription	Left Ventricle	heart
2	chr12:44317600-44325400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr12:44319000-44325600	Weak transcription	Esophagus	oesophagus
4	chr12:44324000-44325200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:44324200-44324800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:44324200-44325000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:44324200-44325000	ZNF genes & repeats	Aorta	Aorta
8	chr12:44324200-44325000	ZNF genes & repeats	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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