Variant report

Variant	rs11182425
Chromosome Location	chr12:44534464-44534465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11182427	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12296789	0.83[AFR][1000 genomes]
rs12297184	1.00[AMR][1000 genomes]
rs12297528	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12299149	0.83[AFR][1000 genomes]
rs12303013	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12304524	1.00[AMR][1000 genomes]
rs12305063	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12306297	1.00[AMR][1000 genomes]
rs12309109	1.00[AMR][1000 genomes]
rs12311205	1.00[AMR][1000 genomes]
rs12311262	1.00[AMR][1000 genomes]
rs12312664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12314835	1.00[AMR][1000 genomes]
rs12316922	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12319132	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13377946	0.83[AFR][1000 genomes]
rs60006361	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44511400-44605800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:44522400-44545200	Weak transcription	HSMMtube	muscle
3	chr12:44530800-44573200	Weak transcription	Pancreas	Pancrea
4	chr12:44531600-44547800	Weak transcription	Psoas Muscle	Psoas
5	chr12:44531800-44540800	Weak transcription	Ovary	ovary
6	chr12:44534000-44534800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:44534400-44534800	ZNF genes & repeats	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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