Variant report

Variant	rs11182464
Chromosome Location	chr12:44705189-44705190
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11182460	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs11182465	0.93[YRI][hapmap]
rs11182468	0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12297701	1.00[AMR][1000 genomes]
rs12301186	0.92[YRI][hapmap]
rs12305404	0.82[LWK][hapmap];0.89[MKK][hapmap]
rs12308857	0.93[YRI][hapmap]
rs12312536	0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12313072	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12313462	0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12316181	0.85[YRI][hapmap]
rs12317783	0.86[YRI][hapmap]
rs12322750	0.93[YRI][hapmap];0.86[AFR][1000 genomes]
rs74084496	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1038498	chr12:44679455-44816572	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3402764	chr12:44704785-44706733	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44694600-44706000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr12:44699000-44712600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:44699000-44713800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr12:44699000-44736000	Weak transcription	Pancreas	Pancrea
5	chr12:44699000-44782000	Weak transcription	Aorta	Aorta
6	chr12:44700000-44705800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:44703200-44707600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:44703400-44711800	Weak transcription	Fetal Intestine Small	intestine
9	chr12:44704200-44705400	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links