Variant report

Variant	rs111825861
Chromosome Location	chr7:106999874-106999875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106998806..107000334-chr7:107005300..107008235,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv888939	chr7:106849393-107045700	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv1825788	chr7:106897237-107136320	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv1024793	chr7:106900877-107170312	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv608073	chr7:106960515-107063686	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1832266	chr7:106961882-107136320	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	esv3430180	chr7:106999716-107000219	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106984400-107006200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:106986000-107013200	Weak transcription	Small Intestine	intestine
3	chr7:106989200-107018800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:106990200-107000400	Weak transcription	HMEC	breast
5	chr7:106990400-107000600	Weak transcription	Hela-S3	cervix
6	chr7:106990800-107000000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr7:106991200-107000000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr7:106991400-107000400	Weak transcription	Psoas Muscle	Psoas
9	chr7:106993400-107000200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr7:106993800-107000200	Weak transcription	HepG2	liver
11	chr7:106994800-107000200	Weak transcription	Fetal Lung	lung
12	chr7:106996200-107000000	Weak transcription	Brain Angular Gyrus	brain
13	chr7:106996200-107000200	Weak transcription	HSMMtube	muscle
14	chr7:106996200-107000200	Weak transcription	NH-A	brain
15	chr7:106996400-107000200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:106996400-107000200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:106996400-107000400	Weak transcription	NHDF-Ad	bronchial
18	chr7:106996400-107003000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr7:106996600-107000000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr7:106996600-107000000	Weak transcription	HSMM	muscle
21	chr7:106996600-107000200	Weak transcription	Osteobl	bone
22	chr7:106997400-107000200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:106997400-107000600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:106997600-107000200	Weak transcription	Fetal Brain Male	brain
25	chr7:106997800-107000200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr7:106998000-107000000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:106998000-107000000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr7:106998200-107000400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr7:106998200-107003200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr7:106998400-107000200	Weak transcription	Fetal Kidney	kidney
31	chr7:106998400-107004200	Weak transcription	A549	lung
32	chr7:106998600-107000200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr7:106998600-107000200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr7:106998600-107000400	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:106998600-107003800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr7:106998800-107000200	Strong transcription	K562	blood
37	chr7:106998800-107001600	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr7:106998800-107003200	Strong transcription	Adipose Nuclei	Adipose
39	chr7:106998800-107003800	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr7:106999000-107000200	Strong transcription	Brain Hippocampus Middle	brain
41	chr7:106999000-107000200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr7:106999000-107005000	Weak transcription	HUVEC	blood vessel
43	chr7:106999200-107000200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:106999200-107000200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr7:106999200-107000200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr7:106999200-107001400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:106999200-107001400	ZNF genes & repeats	Spleen	Spleen
48	chr7:106999200-107001600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
49	chr7:106999400-107000000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr7:106999400-107000000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links