Variant report

Variant	rs11182622
Chromosome Location	chr12:45120137-45120138
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10506254	0.89[EUR][1000 genomes]
rs10506255	0.89[EUR][1000 genomes]
rs10785516	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880662	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880663	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11182607	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11182608	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11182617	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11182633	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11609932	0.89[EUR][1000 genomes]
rs11615822	0.89[EUR][1000 genomes]
rs12578861	0.85[EUR][1000 genomes]
rs12579312	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12580824	0.89[EUR][1000 genomes]
rs12581256	0.89[EUR][1000 genomes]
rs12812313	0.97[EUR][1000 genomes]
rs12825403	0.89[EUR][1000 genomes]
rs12827088	0.96[EUR][1000 genomes]
rs12827992	0.89[EUR][1000 genomes]
rs12828039	0.89[EUR][1000 genomes]
rs12830054	0.97[EUR][1000 genomes]
rs12830788	0.97[EUR][1000 genomes]
rs1450538	0.89[EUR][1000 genomes]
rs1452259	0.88[EUR][1000 genomes]
rs1452260	0.89[EUR][1000 genomes]
rs1452261	0.89[EUR][1000 genomes]
rs1517205	0.89[EUR][1000 genomes]
rs1562965	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1597808	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17573326	0.89[EUR][1000 genomes]
rs17573382	0.89[EUR][1000 genomes]
rs17574950	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17575124	0.97[EUR][1000 genomes]
rs17575145	0.97[EUR][1000 genomes]
rs17651444	0.89[EUR][1000 genomes]
rs17651576	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17652016	0.89[EUR][1000 genomes]
rs17652045	0.89[EUR][1000 genomes]
rs17652213	0.89[EUR][1000 genomes]
rs17652890	0.89[EUR][1000 genomes]
rs1869161	0.89[EUR][1000 genomes]
rs2122530	0.89[EUR][1000 genomes]
rs2290353	0.89[EUR][1000 genomes]
rs2290354	0.89[EUR][1000 genomes]
rs2290355	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs33995718	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34059115	0.97[EUR][1000 genomes]
rs34354933	0.89[EUR][1000 genomes]
rs34560815	0.89[EUR][1000 genomes]
rs34775637	0.94[EUR][1000 genomes]
rs34882841	0.89[EUR][1000 genomes]
rs34985115	0.97[EUR][1000 genomes]
rs35051815	0.89[EUR][1000 genomes]
rs35180883	0.89[EUR][1000 genomes]
rs35934410	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35977363	0.89[EUR][1000 genomes]
rs36054479	0.89[EUR][1000 genomes]
rs4488263	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55841784	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57004692	0.85[EUR][1000 genomes]
rs57933837	0.89[EUR][1000 genomes]
rs59379685	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61932405	0.89[EUR][1000 genomes]
rs66572050	0.89[EUR][1000 genomes]
rs7295695	0.87[EUR][1000 genomes]
rs7308333	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73098383	0.87[ASN][1000 genomes]
rs7953273	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963713	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7971322	0.89[EUR][1000 genomes]
rs7971937	0.97[EUR][1000 genomes]
rs7978549	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv832394	chr12:45077573-45269305	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1049080	chr12:45097564-45195295	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45080800-45136000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:45116400-45122200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:45118200-45123600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links