Variant report

Variant	rs11182915
Chromosome Location	chr12:45605590-45605591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:45600294..45606822-chr12:45606984..45612571,15	K562	blood:
2	chr12:45603426..45606257-chr12:45608109..45611141,4	K562	blood:

Variant related genes	Relation type
ENSG00000134297	Chromatin interaction
ENSG00000177119	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10459294	0.81[AFR][1000 genomes]
rs11182919	0.83[AFR][1000 genomes]
rs11182921	0.83[AFR][1000 genomes]
rs11182927	0.81[AFR][1000 genomes]
rs12815115	0.84[AFR][1000 genomes]
rs12822746	0.81[AFR][1000 genomes]
rs12828052	0.81[AFR][1000 genomes]
rs17095551	0.83[AFR][1000 genomes]
rs2408185	0.81[AFR][1000 genomes]
rs3759077	0.83[AFR][1000 genomes]
rs3759082	0.83[AFR][1000 genomes]
rs3782131	0.83[AFR][1000 genomes]
rs61923825	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050923	chr12:45581310-45808289	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45595200-45608600	Weak transcription	Fetal Thymus	thymus
2	chr12:45595200-45608600	Weak transcription	Small Intestine	intestine
3	chr12:45595400-45608600	Weak transcription	Fetal Intestine Large	intestine
4	chr12:45600000-45608600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr12:45600200-45607800	Weak transcription	Primary B cells from cord blood	blood
6	chr12:45600200-45607800	Weak transcription	GM12878-XiMat	blood
7	chr12:45600200-45608000	Weak transcription	Primary T cells from cord blood	blood
8	chr12:45600200-45608000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr12:45600200-45608600	Weak transcription	Thymus	Thymus
10	chr12:45600400-45608000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr12:45600400-45608200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr12:45600400-45608200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr12:45600400-45608400	Weak transcription	Adipose Nuclei	Adipose
14	chr12:45603200-45608000	Weak transcription	NHEK	skin
15	chr12:45603200-45608400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr12:45603200-45608600	Weak transcription	Ovary	ovary
17	chr12:45603400-45608000	Weak transcription	A549	lung
18	chr12:45603400-45608400	Weak transcription	HepG2	liver
19	chr12:45603400-45608600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr12:45603400-45608600	Weak transcription	Liver	Liver
21	chr12:45603400-45608600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr12:45604000-45608000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr12:45604600-45607000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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