Variant report

Variant	rs11183171
Chromosome Location	chr12:46096686-46096687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12305417	0.90[YRI][hapmap]
rs12309988	1.00[MEX][hapmap]
rs6582575	1.00[MEX][hapmap]
rs7296694	1.00[MEX][hapmap]
rs7303119	1.00[MEX][hapmap]
rs7308856	1.00[MEX][hapmap]
rs7308893	1.00[MEX][hapmap]
rs7964495	1.00[MEX][hapmap]
rs7972650	1.00[MEX][hapmap]
rs7975170	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899052	chr12:46068394-46175469	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
2	esv32607	chr12:46087430-46097227	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46088400-46097400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:46095800-46106800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr12:46096200-46097200	Enhancers	Fetal Heart	heart
4	chr12:46096600-46097200	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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