Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10785649	0.97[EUR][1000 genomes]
rs10881023	0.97[EUR][1000 genomes]
rs10881025	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11183699	0.92[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes]
rs2263492	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2408647	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2522258	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2522263	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2522269	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2522275	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2711695	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2711698	0.95[ASN][1000 genomes]
rs2711699	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2711702	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4768769	0.96[EUR][1000 genomes]
rs7139072	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7305283	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7971310	0.82[AMR][1000 genomes]
rs7972871	0.81[AMR][1000 genomes]
rs7978006	0.97[EUR][1000 genomes]
rs7979771	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845143	chr12:47051076-47431496	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv469368	chr12:47374908-47675680	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv558784	chr12:47374908-47675680	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11183695	CCNT1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47416600-47422800	Weak transcription	A549	lung
2	chr12:47418000-47428400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:47418400-47426600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr12:47418600-47421000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:47419200-47426600	Weak transcription	Osteobl	bone

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