Variant report

Variant	rs111843176
Chromosome Location	chr14:35136220-35136221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35135275..35136944-chr14:35151040..35152580,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1038360	chr14:35040853-35152886	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv564195	chr14:35107957-35153991	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1038792	chr14:35108080-35160860	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1053843	chr14:35110120-35167640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv542028	chr14:35110120-35167640	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1049026	chr14:35110285-35160860	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv564196	chr14:35110512-35152084	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv564198	chr14:35118196-35152084	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
13	nsv542029	chr14:35118620-35152886	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	esv3308372	chr14:35128027-35136679	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3309373	chr14:35128041-35136675	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv564199	chr14:35135186-35167362	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35134200-35136400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:35134200-35136400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:35134200-35136400	Enhancers	HUVEC	blood vessel
4	chr14:35134200-35136400	Enhancers	NHLF	lung
5	chr14:35134200-35136600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:35134200-35136600	Enhancers	NHDF-Ad	bronchial
7	chr14:35134400-35136400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr14:35134400-35137000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:35134400-35139200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:35134600-35136400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr14:35134600-35136600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr14:35134600-35137800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:35134800-35136400	Enhancers	Primary hematopoietic stem cells	blood
14	chr14:35135600-35137800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr14:35135600-35140800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr14:35135800-35136400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr14:35135800-35136400	Enhancers	A549	lung
18	chr14:35135800-35136600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr14:35135800-35137200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:35135800-35140800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr14:35136000-35136400	Weak transcription	K562	blood
22	chr14:35136000-35137400	Weak transcription	Osteobl	bone
23	chr14:35136000-35139600	Weak transcription	Hela-S3	cervix
24	chr14:35136000-35144600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:35136200-35136400	Enhancers	Primary T cells fromperipheralblood	blood
26	chr14:35136200-35136400	Enhancers	Fetal Muscle Leg	muscle
27	chr14:35136200-35136400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr14:35136200-35136800	Enhancers	Spleen	Spleen
29	chr14:35136200-35137800	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links