Variant report

Variant	rs111852586
Chromosome Location	chr10:98559379-98559380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98553768..98555619-chr10:98557263..98560148,2	K562	blood:
2	chr10:98557607..98559906-chr10:98561974..98564519,2	K562	blood:
3	chr10:98558078..98559906-chr10:98563019..98564889,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	esv3422724	chr10:98558962-98563560	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98546000-98561200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:98550800-98561200	Weak transcription	Primary B cells from cord blood	blood
3	chr10:98554200-98561200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:98554800-98561200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:98555000-98561200	Weak transcription	Hela-S3	cervix
6	chr10:98555000-98561200	Weak transcription	Osteobl	bone
7	chr10:98555200-98559600	Weak transcription	Adipose Nuclei	Adipose
8	chr10:98555200-98561200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:98555200-98561200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:98555400-98560400	Enhancers	Fetal Intestine Small	intestine
11	chr10:98555400-98560600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:98555400-98560800	Enhancers	Fetal Intestine Large	intestine
13	chr10:98555400-98561200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:98557200-98560200	Enhancers	HepG2	liver
15	chr10:98557600-98560200	Enhancers	Duodenum Mucosa	Duodenum
16	chr10:98557800-98561200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr10:98558400-98560200	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr10:98558600-98560800	Enhancers	Placenta	Placenta
19	chr10:98558800-98560000	Weak transcription	Fetal Kidney	kidney
20	chr10:98558800-98560800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:98558800-98561200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:98558800-98561200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr10:98558800-98561200	Weak transcription	Stomach Mucosa	stomach
24	chr10:98559200-98561200	Weak transcription	Colonic Mucosa	Colon
25	chr10:98559200-98561200	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links