Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:135217363..135219573-chr3:135220450..135222728,2	MCF-7	breast:
2	chr3:134513166..134514322-chr3:135222261..135223395,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154928	Chromatin interaction

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv527433	chr3:135221504-135225249	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518089	chr3:135221504-135232994	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135210600-135222600	Weak transcription	Psoas Muscle	Psoas
2	chr3:135221400-135222400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr3:135221400-135223400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:135221800-135223000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:135222000-135222400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:135222000-135222400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:135222000-135222400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:135222000-135222600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
9	chr3:135222000-135222800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr3:135222000-135222800	Flanking Active TSS	Fetal Brain Male	brain
11	chr3:135222000-135222800	Flanking Active TSS	Fetal Brain Female	brain
12	chr3:135222000-135223000	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr3:135222200-135222400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:135222200-135222400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:135222200-135222400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:135222200-135222800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:135222200-135222800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr3:135222200-135222800	Enhancers	Primary B cells from peripheral blood	blood
19	chr3:135222200-135222800	Enhancers	GM12878-XiMat	blood
20	chr3:135222200-135223200	Active TSS	Brain Cingulate Gyrus	brain

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