Variant report

Variant	rs11185602
Chromosome Location	chr7:50299077-50299078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1026422	0.93[ASN][1000 genomes]
rs11185603	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12718257	0.85[ASN][1000 genomes]
rs17133750	0.80[AFR][1000 genomes]
rs17552904	0.98[ASN][1000 genomes]
rs17634369	0.91[ASN][1000 genomes]
rs1870027	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2168589	0.85[AMR][1000 genomes]
rs4385425	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4598207	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4917014	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4917015	0.93[ASN][1000 genomes]
rs4917129	0.91[ASN][1000 genomes]
rs55935382	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62445350	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62447171	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6964608	0.90[ASN][1000 genomes]
rs876036	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs876037	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs876038	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs876039	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50292200-50299200	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr7:50296600-50299200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:50298000-50300800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr7:50298000-50301800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr7:50298000-50304000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:50298000-50306200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr7:50298200-50301000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:50298400-50299400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:50299000-50301200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr7:50299000-50306000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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