Variant report

Variant	rs11185924
Chromosome Location	chr10:91647417-91647418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10785913	0.93[ASN][1000 genomes]
rs10785914	0.96[ASN][1000 genomes]
rs10785915	0.97[ASN][1000 genomes]
rs10785916	0.97[ASN][1000 genomes]
rs10881699	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881702	0.97[ASN][1000 genomes]
rs10881703	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881704	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881705	0.97[ASN][1000 genomes]
rs11185912	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185913	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11185914	0.97[ASN][1000 genomes]
rs11185917	0.96[ASN][1000 genomes]
rs11185918	0.96[ASN][1000 genomes]
rs11185919	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185923	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185925	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12268911	0.97[ASN][1000 genomes]
rs12356290	0.95[ASN][1000 genomes]
rs1324704	0.97[ASN][1000 genomes]
rs1359376	0.98[ASN][1000 genomes]
rs1359377	0.97[ASN][1000 genomes]
rs1359378	0.97[ASN][1000 genomes]
rs1359379	0.97[ASN][1000 genomes]
rs1359380	0.97[ASN][1000 genomes]
rs1886406	0.97[ASN][1000 genomes]
rs1886410	0.91[ASN][1000 genomes]
rs1886411	0.93[ASN][1000 genomes]
rs1886412	0.96[ASN][1000 genomes]
rs1924710	0.97[ASN][1000 genomes]
rs1924711	0.96[ASN][1000 genomes]
rs1924712	0.96[ASN][1000 genomes]
rs7350427	0.96[ASN][1000 genomes]
rs7899557	0.97[ASN][1000 genomes]
rs7913846	0.97[ASN][1000 genomes]
rs9633686	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv949678	chr10:91589048-92016474	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91642600-91664200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:91645800-91650800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:91646400-91648800	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:91646600-91647800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr10:91646800-91647600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:91646800-91650200	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:91647000-91647600	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr10:91647200-91647600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr10:91647200-91647800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:91647200-91648000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:91647200-91648200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr10:91647200-91648200	Flanking Active TSS	GM12878-XiMat	blood
13	chr10:91647200-91650600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:91647400-91648000	Enhancers	Placenta	Placenta
15	chr10:91647400-91649400	Enhancers	Thymus	Thymus
16	chr10:91647400-91650400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr10:91647400-91650600	Enhancers	Fetal Thymus	thymus

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