Variant report

Variant	rs11187075
Chromosome Location	chr10:94336029-94336030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr10:94335783-94336138	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr10:94335734-94336078	IMR90	lung:	n/a	n/a
3	MYC	chr10:94335738-94336106	NB4	blood:	n/a	n/a
4	FOS	chr10:94335672-94336173	MCF10A-Er-Src	breast:	n/a	n/a
5	SPI1	chr10:94335732-94336354	HL-60	blood:	n/a	chr10:94336207-94336220 chr10:94336213-94336222
6	STAT3	chr10:94335746-94336127	MCF10A-Er-Src	breast:	n/a	n/a
7	CEBPB	chr10:94335755-94336080	A549	lung:	n/a	n/a
8	CEBPB	chr10:94335724-94336090	Hela-S3	cervix:	n/a	n/a
9	FOS	chr10:94335677-94336068	MCF10A-Er-Src	breast:	n/a	n/a
10	E2F4	chr10:94335803-94336065	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr10:94335679-94336114	MCF10A-Er-Src	breast:	n/a	n/a
12	FOS	chr10:94335672-94336148	MCF10A-Er-Src	breast:	n/a	n/a
13	MAX	chr10:94335734-94336166	NB4	blood:	n/a	n/a
14	STAT3	chr10:94335859-94336100	MCF10A-Er-Src	breast:	n/a	n/a
15	MYC	chr10:94335737-94336036	MCF10A-Er-Src	breast:	n/a	n/a
16	STAT3	chr10:94335953-94336153	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94327650..94337583-chr10:94349444..94356782,22	K562	blood:
2	chr10:94334145..94336156-chr10:94441112..94444728,3	K562	blood:
3	chr10:94300885..94308768-chr10:94330971..94336052,7	K562	blood:
4	chr10:94330286..94336827-chr10:94349891..94354260,15	K562	blood:
5	chr10:94334190..94336878-chr10:94340281..94341907,2	K562	blood:
6	chr10:94332262..94336114-chr10:94349834..94354042,11	MCF-7	breast:
7	chr10:94333616..94336720-chr10:94448718..94451044,3	K562	blood:

No data

Variant related genes	Relation type
IDE	TF binding region
ENSG00000152804	Chromatin interaction
ENSG00000119912	Chromatin interaction
ENSG00000138160	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12263054	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94334800-94336400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:94335000-94336200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:94335000-94336200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:94335000-94336200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:94335000-94336200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:94335000-94336200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:94335000-94336200	Enhancers	NH-A	brain
8	chr10:94335000-94336400	Enhancers	HSMM	muscle
9	chr10:94335000-94336600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr10:94335000-94339600	Weak transcription	Brain Angular Gyrus	brain
11	chr10:94335200-94336200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:94335200-94336200	Enhancers	A549	lung
13	chr10:94335200-94336200	Enhancers	Hela-S3	cervix
14	chr10:94335200-94336400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:94335200-94336400	Enhancers	HMEC	breast
16	chr10:94335200-94336400	Enhancers	NHEK	skin
17	chr10:94335200-94336800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr10:94335200-94338800	Weak transcription	Fetal Kidney	kidney
19	chr10:94335600-94336200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:94335600-94336200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr10:94335800-94336200	Enhancers	K562	blood
22	chr10:94335800-94336400	Enhancers	Primary hematopoietic stem cells	blood
23	chr10:94336000-94336200	Enhancers	HepG2	liver
24	chr10:94336000-94336200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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