The 2.0 version of rSNPBase

Variant report

Variant rs111872167
Chromosome Location chr2:180293649-180293650
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:180292800-180293800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr2:180292800-180294600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
3 chr2:180292800-180294600 Enhancers Brain Germinal Matrix brain
4 chr2:180293000-180293800 Enhancers Cortex derived primary cultured neurospheres brain
5 chr2:180293000-180294200 Enhancers Fetal Muscle Leg muscle
6 chr2:180293000-180294600 Enhancers H1 Cell Line embryonic stem cell
7 chr2:180293200-180293800 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
8 chr2:180293200-180293800 Flanking Active TSS Fetal Brain Female brain
9 chr2:180293200-180294000 Flanking Active TSS HUES48 Cell Line embryonic stem cell
10 chr2:180293200-180294200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
11 chr2:180293200-180294400 Enhancers iPS-18 Cell Line embryonic stem cell
12 chr2:180293400-180293800 Enhancers H9 Cell Line embryonic stem cell
13 chr2:180293400-180293800 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr2:180293400-180293800 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
15 chr2:180293400-180293800 Enhancers Muscle Satellite Cultured Cells --
16 chr2:180293400-180293800 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr2:180293400-180293800 Flanking Active TSS Adipose Nuclei Adipose
18 chr2:180293400-180293800 Active TSS Brain Angular Gyrus brain
19 chr2:180293400-180293800 Flanking Active TSS Fetal Brain Male brain
20 chr2:180293400-180293800 Active TSS NHDF-Ad bronchial
21 chr2:180293400-180294000 Active TSS ES-I3 Cell Line embryonic stem cell
22 chr2:180293400-180294000 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
23 chr2:180293400-180294000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr2:180293400-180294200 Active TSS iPS-20b Cell Line embryonic stem cell
25 chr2:180293400-180294200 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
26 chr2:180293400-180294200 Active TSS Brain Inferior Temporal Lobe brain
27 chr2:180293400-180294200 Enhancers Brain Substantia Nigra brain
28 chr2:180293400-180294200 Active TSS Duodenum Smooth Muscle Duodenum
29 chr2:180293400-180294200 Bivalent/Poised TSS Stomach Smooth Muscle stomach
30 chr2:180293400-180294200 Flanking Bivalent TSS/Enh HepG2 liver
31 chr2:180293400-180294200 Enhancers NH-A brain
32 chr2:180293400-180294200 Flanking Active TSS Osteobl bone
33 chr2:180293600-180293800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr2:180293600-180293800 Active TSS Brain Anterior Caudate brain
35 chr2:180293600-180293800 Flanking Active TSS Brain Cingulate Gyrus brain
36 chr2:180293600-180293800 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
37 chr2:180293600-180294000 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr2:180293600-180294000 Bivalent Enhancer H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr2:180293600-180294000 Flanking Active TSS HUES6 Cell Line embryonic stem cell
40 chr2:180293600-180294000 Flanking Active TSS HUES64 Cell Line embryonic stem cell
41 chr2:180293600-180294000 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr2:180293600-180294000 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
43 chr2:180293600-180294000 Flanking Active TSS Ovary ovary
44 chr2:180293600-180294000 Flanking Bivalent TSS/Enh Skeletal Muscle Male skeletal muscle
45 chr2:180293600-180294200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
46 chr2:180293600-180294200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
47 chr2:180293600-180294200 Enhancers Liver Liver
48 chr2:180293600-180294200 Flanking Active TSS Brain Hippocampus Middle brain
49 chr2:180293600-180294200 Enhancers Fetal Muscle Trunk muscle
50 chr2:180293600-180294400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015