Variant report

Variant	rs111875688
Chromosome Location	chr19:37046235-37046236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37018112..37020979-chr19:37045108..37047267,3	K562	blood:
2	chr19:37019252..37020979-chr19:37045716..37047267,2	K562	blood:

Variant related genes	Relation type
ENSG00000254004	Chromatin interaction
ENSG00000228629	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv911648	chr19:36914171-37047472	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
6	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
7	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
8	nsv1056134	chr19:37022039-37056943	Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
9	esv3358390	chr19:37045462-37047560	ZNF genes & repeats Strong transcription Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	esv2570514	chr19:37045624-37047126	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	esv2205269	chr19:37045989-37046712	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
12	esv3519754	chr19:37046094-37046596	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
13	esv3519755	chr19:37046095-37046607	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
14	esv3519751	chr19:37046109-37046532	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
15	esv3318094	chr19:37046113-37046594	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
16	esv3318098	chr19:37046119-37046569	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
17	esv3318095	chr19:37046123-37046566	ZNF genes & repeats Strong transcription Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
18	esv3318097	chr19:37046129-37046519	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
19	esv3352701	chr19:37046131-37046555	Strong transcription ZNF genes & repeats Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
20	esv3519756	chr19:37046145-37046546	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
21	esv3450818	chr19:37046151-37046525	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
22	esv3318099	chr19:37046165-37046501	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
23	esv3318093	chr19:37046167-37046503	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
24	esv3519753	chr19:37046180-37046497	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
25	nsv138053	chr19:37046182-37046497	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
26	esv3318100	chr19:37046182-37046512	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
27	esv3519757	chr19:37046182-37046512	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
28	esv1008911	chr19:37046189-37046504	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
29	esv1768990	chr19:37046195-37046511	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37021400-37061600	ZNF genes & repeats	Liver	Liver
2	chr19:37022800-37061200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:37023000-37061800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:37023200-37048400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr19:37023200-37060200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
6	chr19:37023200-37061600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:37023400-37048800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr19:37023400-37060000	ZNF genes & repeats	Fetal Lung	lung
9	chr19:37023400-37062000	ZNF genes & repeats	Fetal Brain Female	brain
10	chr19:37023400-37063000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr19:37023600-37061000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
12	chr19:37023800-37057800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr19:37023800-37058200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr19:37023800-37058200	ZNF genes & repeats	Dnd41	blood
15	chr19:37023800-37061600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr19:37025400-37052400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr19:37025600-37049000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
18	chr19:37025600-37053000	ZNF genes & repeats	Brain Anterior Caudate	brain
19	chr19:37025600-37061000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
20	chr19:37025600-37062800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr19:37025800-37048000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr19:37025800-37048400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
23	chr19:37025800-37060200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
24	chr19:37027400-37054400	ZNF genes & repeats	Brain Hippocampus Middle	brain
25	chr19:37027600-37049200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
26	chr19:37028600-37050800	ZNF genes & repeats	Primary B cells from cord blood	blood
27	chr19:37028600-37055000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
28	chr19:37028600-37061800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
29	chr19:37028800-37048800	ZNF genes & repeats	Brain Substantia Nigra	brain
30	chr19:37028800-37054400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
31	chr19:37029000-37060000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
32	chr19:37030600-37048600	ZNF genes & repeats	Brain Germinal Matrix	brain
33	chr19:37031400-37047800	ZNF genes & repeats	Colon Smooth Muscle	Colon
34	chr19:37031400-37049600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
35	chr19:37031400-37056800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
36	chr19:37031400-37057800	ZNF genes & repeats	Primary T cells from cord blood	blood
37	chr19:37032800-37048000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
38	chr19:37033400-37047800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
39	chr19:37033400-37048400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
40	chr19:37033400-37051000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr19:37033600-37048000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr19:37033600-37048600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
43	chr19:37033800-37047600	ZNF genes & repeats	Fetal Kidney	kidney
44	chr19:37033800-37048000	ZNF genes & repeats	HSMMtube	muscle
45	chr19:37033800-37048400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
46	chr19:37034000-37054000	ZNF genes & repeats	A549	lung
47	chr19:37034000-37063000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr19:37034200-37052800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
49	chr19:37034200-37059600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
50	chr19:37034400-37047800	ZNF genes & repeats	Rectal Smooth Muscle	rectum

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