Variant report

Variant	rs111876971
Chromosome Location	chr9:103014536-103014537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv1835721	chr9:102991314-103096666	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	esv3353349	chr9:103014446-103038360	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102972400-103017200	Weak transcription	Spleen	Spleen
2	chr9:102972400-103035200	Weak transcription	Esophagus	oesophagus
3	chr9:102972600-103027200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:102972600-103046600	Weak transcription	Psoas Muscle	Psoas
5	chr9:102973000-103014600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr9:102973000-103027400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr9:102973000-103053800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:102974000-103014600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:102974000-103047600	Weak transcription	Fetal Brain Male	brain
10	chr9:102974200-103014600	Weak transcription	Brain Angular Gyrus	brain
11	chr9:102975800-103045800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:102976800-103047800	Weak transcription	Fetal Heart	heart
13	chr9:102977000-103014600	Weak transcription	NH-A	brain
14	chr9:102979400-103054600	Weak transcription	NHEK	skin
15	chr9:102984000-103014600	Weak transcription	HSMMtube	muscle
16	chr9:102986600-103018800	Weak transcription	Small Intestine	intestine
17	chr9:102987400-103014600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr9:102987400-103045800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr9:102987400-103054600	Weak transcription	Gastric	stomach
20	chr9:102989400-103014600	Weak transcription	Brain Hippocampus Middle	brain
21	chr9:102989400-103047200	Weak transcription	GM12878-XiMat	blood
22	chr9:102989600-103027600	Weak transcription	A549	lung
23	chr9:102989800-103014600	Weak transcription	Placenta	Placenta
24	chr9:102990200-103014600	Weak transcription	Brain Anterior Caudate	brain
25	chr9:102991000-103016600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:102992400-103014600	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr9:102992400-103027200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:102992600-103039000	Weak transcription	NHDF-Ad	bronchial
29	chr9:102994800-103046600	Weak transcription	Pancreas	Pancrea
30	chr9:102997800-103054400	Weak transcription	Colonic Mucosa	Colon
31	chr9:102999600-103027400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr9:102999800-103014600	Weak transcription	Thymus	Thymus
33	chr9:102999800-103020600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
34	chr9:102999800-103028000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr9:102999800-103035200	Weak transcription	Right Ventricle	heart
36	chr9:103000000-103014600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:103000000-103014600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr9:103000000-103021000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:103000000-103021000	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr9:103000000-103021000	Weak transcription	Fetal Thymus	thymus
41	chr9:103000000-103021000	Weak transcription	Lung	lung
42	chr9:103000000-103021600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr9:103000000-103034800	Weak transcription	Aorta	Aorta
44	chr9:103000200-103027400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr9:103000400-103020600	Weak transcription	Fetal Stomach	stomach
46	chr9:103002600-103027200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr9:103003000-103015200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr9:103003400-103046800	Weak transcription	HMEC	breast
49	chr9:103004400-103016600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr9:103006000-103027400	Weak transcription	Rectal Mucosa Donor 29	rectum

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