Variant report
| Variant | rs111883559 |
|---|---|
| Chromosome Location | chr7:99191651-99191652 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | GATA3 | chr7:99191349-99192187 | MCF-7 | breast: | n/a | n/a |
| 2 | FOXA1 | chr7:99191304-99192201 | HepG2 | liver: | n/a | chr7:99191586-99191601 |
| 3 | FOXA2 | chr7:99191130-99192269 | A549 | lung: | n/a | n/a |
| 4 | GATA3 | chr7:99191559-99191779 | MCF-7 | breast: | n/a | n/a |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000244219 | TF binding region |
| ENSG00000272647 | Chromatin interaction |
| ENSG00000197343 | Chromatin interaction |
| ENSG00000221909 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2554756 | chr7:99182537-99196388 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv824230 | chr7:99190617-99194457 | Weak transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv821509 | chr7:99190617-99194715 | Weak transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | esv3406454 | chr7:99191016-99195714 | Active TSS Genic enhancers Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
