Variant report

Variant	rs11189012
Chromosome Location	chr10:98908774-98908775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11189013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11189014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112464	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2784924	1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs57209536	0.95[ASN][1000 genomes]
rs73324817	0.95[ASN][1000 genomes]
rs73324819	0.95[ASN][1000 genomes]
rs73324820	0.95[ASN][1000 genomes]
rs73324821	0.95[ASN][1000 genomes]
rs73324824	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv7506	chr10:98902440-98940209	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98880200-98912800	Weak transcription	Thymus	Thymus
2	chr10:98892400-98911400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:98901000-98923200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:98901200-98909000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:98901200-98910400	Weak transcription	Brain Germinal Matrix	brain
6	chr10:98901400-98909800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:98901400-98911200	Weak transcription	Fetal Brain Female	brain
8	chr10:98901400-98918400	Weak transcription	Brain Angular Gyrus	brain
9	chr10:98902200-98909800	Weak transcription	HepG2	liver
10	chr10:98904600-98917400	Weak transcription	Brain Anterior Caudate	brain
11	chr10:98904600-98922800	Weak transcription	Fetal Brain Male	brain
12	chr10:98905400-98910000	Weak transcription	Spleen	Spleen
13	chr10:98907400-98909200	Weak transcription	Fetal Thymus	thymus
14	chr10:98907800-98922800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:98908200-98911400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:98908600-98908800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:98908600-98910400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr10:98908600-98911000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:98908600-98912400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:98908600-98913400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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