Variant report

Variant	rs11189212
Chromosome Location	chr10:99178747-99178748
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99174155..99176594-chr10:99178151..99179962,2	MCF-7	breast:
2	chr10:99178412..99183286-chr10:99183902..99188289,4	K562	blood:
3	chr10:99158317..99161416-chr10:99176559..99179777,3	K562	blood:
4	chr10:99159177..99160886-chr10:99176559..99179159,2	K562	blood:
5	chr10:99171315..99175453-chr10:99176654..99180468,6	K562	blood:
6	chr10:99176991..99182775-chr10:99183273..99189892,9	MCF-7	breast:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL355490.1-1	chr10:99178541-99179252	XLOC_008916
2	lnc-AL355490.1-1	chr10:99176179-99185666	NONHSAT015863

No data

Variant related genes	Relation type
ENSG00000171314	Chromatin interaction
ENSG00000224474	Chromatin interaction
ENSG00000231970	Chromatin interaction
ENSG00000052749	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11189219	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11189220	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12356802	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2185513	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467440	chr10:99134784-99204791	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv552025	chr10:99134784-99204791	Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99161600-99178800	Weak transcription	Fetal Stomach	stomach
2	chr10:99161600-99185200	Weak transcription	Pancreas	Pancrea
3	chr10:99167400-99179000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:99167400-99185200	Weak transcription	Fetal Lung	lung
5	chr10:99167400-99185400	Weak transcription	Gastric	stomach
6	chr10:99167600-99185200	Weak transcription	Fetal Intestine Small	intestine
7	chr10:99167600-99185200	Weak transcription	Left Ventricle	heart
8	chr10:99171400-99179400	Weak transcription	Spleen	Spleen
9	chr10:99171400-99185200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:99173200-99182800	Weak transcription	HUVEC	blood vessel
11	chr10:99173800-99182400	Weak transcription	Esophagus	oesophagus
12	chr10:99174000-99185000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:99174200-99179000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:99174200-99183000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:99174200-99184800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:99174200-99185000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr10:99175000-99182800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:99175200-99178800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:99175200-99179000	Weak transcription	HSMMtube	muscle
20	chr10:99175200-99182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:99175200-99182800	Weak transcription	NH-A	brain
22	chr10:99175200-99182800	Weak transcription	Osteobl	bone
23	chr10:99175400-99185000	Weak transcription	Brain Germinal Matrix	brain
24	chr10:99176600-99179000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr10:99176600-99183000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr10:99176600-99185200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:99177800-99178800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:99177800-99178800	Enhancers	HepG2	liver
29	chr10:99177800-99179200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:99177800-99179200	Enhancers	Fetal Kidney	kidney
31	chr10:99177800-99179800	Enhancers	Fetal Thymus	thymus
32	chr10:99177800-99185200	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr10:99178000-99178800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:99178000-99178800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:99178000-99178800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:99178000-99178800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:99178000-99178800	Enhancers	GM12878-XiMat	blood
38	chr10:99178000-99178800	Enhancers	NHDF-Ad	bronchial
39	chr10:99178000-99179200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:99178000-99179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr10:99178000-99179200	Enhancers	Fetal Muscle Leg	muscle
42	chr10:99178000-99179200	Enhancers	Placenta	Placenta
43	chr10:99178000-99179200	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr10:99178000-99179200	Active TSS	Rectal Smooth Muscle	rectum
45	chr10:99178000-99179200	Enhancers	Stomach Mucosa	stomach
46	chr10:99178000-99179200	Enhancers	HMEC	breast
47	chr10:99178000-99179400	Enhancers	Primary hematopoietic stem cells	blood
48	chr10:99178000-99179400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr10:99178000-99179400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr10:99178000-99179800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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