Variant report

Variant	rs111911096
Chromosome Location	chr12:57294589-57294590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
2	nsv899107	chr12:57293436-57321212	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57291000-57295600	Enhancers	HMEC	breast
2	chr12:57291200-57295800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:57291800-57296800	Enhancers	K562	blood
4	chr12:57292600-57294600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr12:57293600-57294600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:57293600-57294800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr12:57293600-57294800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:57293600-57294800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:57293600-57294800	ZNF genes & repeats	Gastric	stomach
10	chr12:57293600-57295200	ZNF genes & repeats	Lung	lung
11	chr12:57293600-57295200	ZNF genes & repeats	NHEK	skin
12	chr12:57293600-57295600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:57293800-57294600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr12:57293800-57295000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:57293800-57295400	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr12:57294000-57295000	Enhancers	A549	lung
17	chr12:57294200-57295000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr12:57294400-57294600	ZNF genes & repeats	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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