Variant report

Variant	rs11194185
Chromosome Location	chr10:110354466-110354467
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11194188	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11194190	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11194191	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2225536	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831983	chr10:110267919-110467318	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv2761624	chr10:110303323-110411575	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110351400-110355200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:110351600-110356600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:110352600-110355600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:110353000-110355600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:110353800-110354800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:110354000-110354600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:110354000-110354600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:110354000-110354600	Bivalent Enhancer	Fetal Lung	lung
9	chr10:110354000-110355000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr10:110354000-110355000	Enhancers	GM12878-XiMat	blood
11	chr10:110354200-110354600	Enhancers	Fetal Brain Male	brain
12	chr10:110354200-110354800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:110354200-110354800	Enhancers	Primary B cells from peripheral blood	blood
14	chr10:110354200-110355000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:110354400-110354600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr10:110354400-110354600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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