Variant report

Variant	rs11196818
Chromosome Location	chr10:116392798-116392799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116391283..116394049-chr10:116397576..116399844,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10885587	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10885588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10885591	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10885592	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10885593	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10885596	1.00[AFR][1000 genomes]
rs11196805	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11196811	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11196812	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11196815	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11196817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196820	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11196829	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11196831	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11196832	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11196833	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11196834	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11196836	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11196838	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11196839	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11196842	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11196846	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11196865	1.00[AFR][1000 genomes]
rs12161653	0.82[CHB][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12219039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12571734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12572646	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12573191	0.87[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1333689	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs17092202	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17092207	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17092213	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17092218	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17092220	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2497668	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2497681	0.89[CEU][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2497682	0.87[CEU][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4447090	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116390600-116392800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr10:116390800-116392800	Flanking Active TSS	Adipose Nuclei	Adipose
3	chr10:116391000-116392800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:116391000-116393000	Enhancers	Small Intestine	intestine
5	chr10:116391400-116392800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:116391400-116395800	Weak transcription	Spleen	Spleen
7	chr10:116391600-116392800	Bivalent/Poised TSS	Fetal Brain Female	brain
8	chr10:116391800-116395200	Enhancers	Placenta Amnion	Placenta Amnion
9	chr10:116392000-116393200	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
10	chr10:116392000-116393600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:116392000-116393600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:116392000-116393600	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr10:116392000-116393600	Flanking Active TSS	NH-A	brain
14	chr10:116392000-116393800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:116392000-116393800	Flanking Active TSS	A549	lung
16	chr10:116392000-116393800	Flanking Active TSS	HSMM	muscle
17	chr10:116392000-116395000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr10:116392200-116392800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr10:116392200-116392800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:116392200-116392800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr10:116392200-116393000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:116392200-116393000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
23	chr10:116392200-116393000	Flanking Active TSS	Liver	Liver
24	chr10:116392200-116393000	Bivalent Enhancer	Brain Substantia Nigra	brain
25	chr10:116392200-116393000	Flanking Bivalent TSS/Enh	HepG2	liver
26	chr10:116392200-116393200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
27	chr10:116392200-116393200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
28	chr10:116392200-116393200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:116392200-116393400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:116392200-116393400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:116392200-116393600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:116392200-116393600	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr10:116392200-116393800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:116392200-116393800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:116392200-116393800	Bivalent Enhancer	Fetal Stomach	stomach
36	chr10:116392200-116393800	Flanking Active TSS	NHLF	lung
37	chr10:116392200-116395000	Enhancers	Primary hematopoietic stem cells	blood
38	chr10:116392200-116395400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:116392200-116395400	Enhancers	HMEC	breast
40	chr10:116392200-116395400	Enhancers	NHEK	skin
41	chr10:116392200-116395800	Enhancers	Placenta	Placenta
42	chr10:116392400-116392800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr10:116392400-116392800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
44	chr10:116392400-116392800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
45	chr10:116392400-116392800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr10:116392400-116392800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
47	chr10:116392400-116392800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
48	chr10:116392400-116392800	Flanking Active TSS	Fetal Muscle Trunk	muscle
49	chr10:116392400-116392800	Bivalent Enhancer	Fetal Muscle Leg	muscle
50	chr10:116392400-116392800	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links