Variant report

Variant	rs11196850
Chromosome Location	chr10:116425139-116425140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116423719..116425346-chr10:116427069..116429426,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10787544	0.93[CEU][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10885590	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11196835	0.85[CEU][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11196843	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11196860	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11593135	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes]
rs11597188	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12570718	0.92[CEU][hapmap];0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1333681	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17719358	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17793192	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs35505004	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4568917	0.92[CEU][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4606401	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4752099	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116408600-116441400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr10:116408800-116427400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:116415600-116438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:116418800-116425400	Enhancers	Left Ventricle	heart
5	chr10:116421800-116425200	Enhancers	Right Ventricle	heart
6	chr10:116421800-116425800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:116422200-116425200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:116422600-116426000	Enhancers	HepG2	liver
9	chr10:116424000-116425200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:116424000-116425200	Weak transcription	Fetal Lung	lung
11	chr10:116424000-116425400	Weak transcription	Stomach Mucosa	stomach
12	chr10:116424200-116425200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:116424200-116443000	Weak transcription	Esophagus	oesophagus
14	chr10:116424800-116425200	Enhancers	HSMM	muscle
15	chr10:116424800-116425400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr10:116424800-116425400	Enhancers	Brain Anterior Caudate	brain
17	chr10:116424800-116425600	Enhancers	Fetal Intestine Small	intestine
18	chr10:116424800-116425800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:116424800-116426000	Enhancers	Fetal Intestine Large	intestine
20	chr10:116424800-116426400	Enhancers	Fetal Heart	heart
21	chr10:116424800-116426800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:116424800-116427600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:116425000-116425200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:116425000-116425200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:116425000-116425200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:116425000-116425200	Enhancers	Right Atrium	heart
27	chr10:116425000-116425200	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr10:116425000-116425200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr10:116425000-116425400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:116425000-116425400	Enhancers	Duodenum Mucosa	Duodenum
31	chr10:116425000-116425400	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr10:116425000-116425400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr10:116425000-116425600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr10:116425000-116425800	Enhancers	Adipose Nuclei	Adipose
35	chr10:116425000-116425800	Enhancers	Brain Angular Gyrus	brain
36	chr10:116425000-116425800	Enhancers	Brain Cingulate Gyrus	brain
37	chr10:116425000-116425800	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr10:116425000-116426000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:116425000-116426000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr10:116425000-116426000	Enhancers	Liver	Liver

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