Variant report

Variant	rs11197617
Chromosome Location	chr10:118030775-118030776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:118014146..118017027-chr10:118028962..118031890,3	MCF-7	breast:
2	chr10:117427698..117429252-chr10:118029636..118031173,2	MCF-7	breast:
3	chr10:117902736..117903478-chr10:118030267..118031114,2	MCF-7	breast:
4	chr10:118029653..118031249-chr10:118045197..118046929,2	MCF-7	breast:
5	chr10:117902634..117903478-chr10:118030267..118031232,2	MCF-7	breast:
6	chr10:117892801..117895046-chr10:118029774..118031284,2	MCF-7	breast:
7	chr10:118006561..118008463-chr10:118028900..118031732,2	MCF-7	breast:
8	chr10:117466869..117469113-chr10:118028705..118031024,3	MCF-7	breast:
9	chr10:117840235..117842704-chr10:118029621..118031631,2	MCF-7	breast:
10	chr10:117894623..117897026-chr10:118030243..118031768,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151892	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11197619	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1419877	0.94[EUR][1000 genomes]
rs2577355	0.83[EUR][1000 genomes]
rs730357	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv832000	chr10:117944492-118116253	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3332511	chr10:118030012-118035110	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118029600-118034200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:118029800-118030800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
3	chr10:118029800-118032800	Active TSS	Fetal Kidney	kidney
4	chr10:118030000-118032000	Bivalent Enhancer	Fetal Brain Male	brain
5	chr10:118030000-118034200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr10:118030000-118034400	Active TSS	Rectal Smooth Muscle	rectum
7	chr10:118030000-118034600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
8	chr10:118030200-118031000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:118030200-118032600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:118030200-118033800	Active TSS	HSMM	muscle
11	chr10:118030200-118033800	Active TSS	HSMMtube	muscle
12	chr10:118030200-118034000	Active TSS	Muscle Satellite Cultured Cells	--
13	chr10:118030200-118034200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr10:118030200-118034200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:118030200-118034400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
16	chr10:118030200-118034400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
17	chr10:118030200-118034400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr10:118030200-118034400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
19	chr10:118030200-118034600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
20	chr10:118030400-118030800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:118030400-118030800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
22	chr10:118030400-118030800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:118030400-118030800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr10:118030400-118030800	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
25	chr10:118030400-118030800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr10:118030400-118030800	Bivalent Enhancer	Fetal Heart	heart
27	chr10:118030400-118030800	Bivalent Enhancer	Lung	lung
28	chr10:118030400-118030800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
29	chr10:118030400-118030800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
30	chr10:118030400-118031000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
31	chr10:118030400-118031000	Bivalent/Poised TSS	Psoas Muscle	Psoas
32	chr10:118030400-118031200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:118030400-118031200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:118030400-118031200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
35	chr10:118030400-118031400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
36	chr10:118030400-118031600	Bivalent/Poised TSS	Esophagus	oesophagus
37	chr10:118030400-118031600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
38	chr10:118030400-118031600	Bivalent/Poised TSS	NHLF	lung
39	chr10:118030400-118032000	Bivalent/Poised TSS	Colonic Mucosa	Colon
40	chr10:118030400-118032800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:118030400-118033200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
42	chr10:118030400-118033400	Active TSS	Brain Angular Gyrus	brain
43	chr10:118030400-118033800	Bivalent/Poised TSS	Left Ventricle	heart
44	chr10:118030400-118034200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:118030400-118034200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
46	chr10:118030400-118034200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:118030400-118034200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:118030400-118034200	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr10:118030400-118034400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:118030400-118034600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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