Variant report

Variant	rs11197864
Chromosome Location	chr10:118759102-118759103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:118756635..118759830-chr10:118763258..118765641,4	MCF-7	breast:
2	chr10:118756628..118761775-chr10:118762306..118766688,9	MCF-7	breast:
3	chr10:118750321..118751905-chr10:118758831..118760527,2	K562	blood:

Variant related genes	Relation type
ENSG00000187164	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17095665	0.81[AMR][1000 genomes]
rs17095666	0.81[AMR][1000 genomes]
rs17095675	0.81[AMR][1000 genomes]
rs17095678	0.81[AMR][1000 genomes]
rs17095681	0.81[AMR][1000 genomes]
rs7909376	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118721600-118764000	Weak transcription	Ovary	ovary
2	chr10:118725200-118763000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:118735000-118762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:118737200-118762800	Weak transcription	NHEK	skin
5	chr10:118737400-118760200	Weak transcription	Pancreas	Pancrea
6	chr10:118738800-118762800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:118745000-118760400	Weak transcription	K562	blood
8	chr10:118747400-118763000	Weak transcription	HUVEC	blood vessel
9	chr10:118749800-118759600	Weak transcription	Brain Germinal Matrix	brain
10	chr10:118750200-118764000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:118751200-118760200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:118751600-118763800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:118751800-118760000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:118752400-118763600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr10:118752400-118764000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:118755000-118760400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr10:118755600-118759600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:118755600-118760200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:118755600-118763800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:118755800-118759600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:118755800-118760400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr10:118756600-118761400	Weak transcription	Liver	Liver
23	chr10:118756800-118759600	Weak transcription	Brain Angular Gyrus	brain
24	chr10:118756800-118761400	Weak transcription	A549	lung
25	chr10:118756800-118763200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr10:118756800-118763600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr10:118757000-118761000	Weak transcription	HepG2	liver
28	chr10:118757200-118759600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr10:118757200-118759600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:118757200-118763600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr10:118757400-118759600	Weak transcription	Brain Anterior Caudate	brain
32	chr10:118757400-118759600	Weak transcription	Brain Substantia Nigra	brain
33	chr10:118757400-118762800	Weak transcription	Fetal Intestine Large	intestine
34	chr10:118758400-118760400	Enhancers	Brain Hippocampus Middle	brain
35	chr10:118758600-118761400	Weak transcription	Hela-S3	cervix
36	chr10:118759000-118763600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links