Variant report

Variant	rs11197931
Chromosome Location	chr10:118998934-118998935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs363398	0.89[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832002	chr10:118797070-119005840	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv896038	chr10:118917671-119002667	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	esv1812234	chr10:118977123-119004095	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118997400-119000000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:118997600-119000200	Weak transcription	Primary T cells from cord blood	blood
3	chr10:118998200-119000000	Enhancers	Primary hematopoietic stem cells	blood
4	chr10:118998600-118999000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:118998600-118999200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr10:118998600-119000400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:118998800-118999000	Bivalent Enhancer	Colonic Mucosa	Colon
8	chr10:118998800-118999000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr10:118998800-118999200	Bivalent Enhancer	Placenta	Placenta
10	chr10:118998800-118999400	Bivalent Enhancer	Fetal Stomach	stomach
11	chr10:118998800-118999600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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