Variant report

Variant	rs112001278
Chromosome Location	chr7:18566430-18566431
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv887812	chr7:18548719-18622368	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv971523	chr7:18566197-18569942	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18551400-18568400	Weak transcription	Aorta	Aorta
2	chr7:18553400-18569600	Weak transcription	Left Ventricle	heart
3	chr7:18555200-18580800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:18556200-18575600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:18560400-18574000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr7:18560600-18568400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:18560600-18584200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:18560800-18568400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:18561000-18592600	Weak transcription	NHEK	skin
10	chr7:18561000-18598000	Weak transcription	HMEC	breast
11	chr7:18561400-18575600	Weak transcription	NHDF-Ad	bronchial
12	chr7:18562000-18567600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:18562000-18575600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:18562400-18569800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:18562800-18568600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:18563400-18574400	Weak transcription	Brain Substantia Nigra	brain
17	chr7:18565200-18566600	Enhancers	Fetal Heart	heart
18	chr7:18565200-18570600	Enhancers	Primary B cells from cord blood	blood
19	chr7:18565400-18566600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr7:18565400-18566800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr7:18565400-18568200	Enhancers	Primary B cells from peripheral blood	blood
22	chr7:18565800-18566600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:18565800-18569800	Weak transcription	Psoas Muscle	Psoas
24	chr7:18566200-18567800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:18566200-18568000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:18566400-18574000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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