Variant report

Variant	rs112019763
Chromosome Location	chr6:132128021-132128022
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132127914..132130474-chr8:77911866..77914153,2	MCF-7	breast:
2	chr6:132127756..132130246-chr6:132148008..132150797,2	MCF-7	breast:
3	chr6:132126867..132133246-chr6:132138030..132146402,10	MCF-7	breast:
4	chr6:132126588..132131688-chr6:132138399..132143000,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000200895	Chromatin interaction
ENSG00000219532	Chromatin interaction
ENSG00000164751	Chromatin interaction
ENSG00000237115	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv5479	chr6:132101897-132136593	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	esv3423490	chr6:132127884-132130632	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132124800-132128200	Weak transcription	Stomach Mucosa	stomach
2	chr6:132124800-132128400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:132124800-132128400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:132124800-132128400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:132125000-132128200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:132125000-132128200	Weak transcription	Fetal Stomach	stomach
7	chr6:132126200-132128400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:132126600-132128400	Weak transcription	Ovary	ovary
9	chr6:132126800-132128200	Enhancers	HepG2	liver
10	chr6:132127000-132128200	Weak transcription	Fetal Kidney	kidney
11	chr6:132127400-132128200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:132127600-132128200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:132127600-132128200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:132127800-132128200	Enhancers	NHDF-Ad	bronchial
15	chr6:132127800-132128200	Enhancers	Osteobl	bone
16	chr6:132128000-132128200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
17	chr6:132128000-132128200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
18	chr6:132128000-132128200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr6:132128000-132128200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr6:132128000-132128200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:132128000-132128200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:132128000-132128200	Enhancers	Adipose Nuclei	Adipose
23	chr6:132128000-132128200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:132128000-132128200	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:132128000-132128200	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:132128000-132128200	Enhancers	HSMMtube	muscle
27	chr6:132128000-132128200	Enhancers	NH-A	brain
28	chr6:132128000-132128200	Enhancers	NHLF	lung
29	chr6:132128000-132128400	Enhancers	Liver	Liver
30	chr6:132128000-132128600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
31	chr6:132128000-132130400	Active TSS	Pancreatic Islets	Pancreatic Islet

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