Variant report

Variant	rs112022969
Chromosome Location	chr3:111427460-111427461
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111425995..111428417-chr3:111430718..111432943,2	MCF-7	breast:
2	chr3:111410859..111413288-chr3:111426130..111428349,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240891	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591290	chr3:111427455-111462570	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111410200-111428400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr3:111410200-111433200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:111410600-111443400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:111412800-111430800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr3:111415200-111454200	Weak transcription	Small Intestine	intestine
6	chr3:111415600-111430800	Weak transcription	Osteobl	bone
7	chr3:111415600-111431000	Weak transcription	HMEC	breast
8	chr3:111415600-111436000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:111415600-111436400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:111416200-111431200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:111418200-111442000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr3:111419000-111436000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr3:111419000-111436200	Weak transcription	Stomach Mucosa	stomach
14	chr3:111419600-111428600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:111419600-111431000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:111419600-111431000	Weak transcription	GM12878-XiMat	blood
17	chr3:111420400-111450600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr3:111420600-111445600	Weak transcription	HepG2	liver
19	chr3:111421400-111434600	Weak transcription	A549	lung
20	chr3:111422000-111433400	Weak transcription	HSMMtube	muscle
21	chr3:111422200-111431000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:111422600-111430800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:111423200-111430400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr3:111423200-111434600	Weak transcription	HUVEC	blood vessel
25	chr3:111424600-111428400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:111424600-111441800	Weak transcription	Thymus	Thymus
27	chr3:111425000-111431400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr3:111425800-111441200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr3:111425800-111443800	Weak transcription	Dnd41	blood
30	chr3:111426200-111431200	Weak transcription	Esophagus	oesophagus
31	chr3:111426400-111430200	Weak transcription	Brain Germinal Matrix	brain
32	chr3:111426600-111428400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr3:111426600-111430000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr3:111426800-111427600	Strong transcription	Fetal Intestine Small	intestine
35	chr3:111426800-111427600	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr3:111426800-111428000	Strong transcription	Fetal Thymus	thymus
37	chr3:111426800-111428800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:111426800-111429400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:111426800-111429800	Strong transcription	Primary T cells from cord blood	blood
40	chr3:111426800-111429800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr3:111426800-111430600	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr3:111426800-111430800	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr3:111426800-111431000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:111426800-111436400	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr3:111427000-111428600	Strong transcription	Placenta	Placenta
46	chr3:111427000-111428800	Strong transcription	Primary B cells from cord blood	blood
47	chr3:111427000-111428800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
48	chr3:111427000-111429000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr3:111427000-111429000	Strong transcription	Primary hematopoietic stem cells	blood
50	chr3:111427000-111431200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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