Variant report

Variant	rs11202642
Chromosome Location	chr10:89822258-89822259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10788580	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11202645	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2311740	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs945559	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89819400-89830400	Enhancers	Primary T cells from cord blood	blood
2	chr10:89819800-89823200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:89819800-89826400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr10:89819800-89828200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr10:89819800-89832800	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:89820000-89822800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:89820000-89826200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr10:89820000-89826400	Enhancers	Primary B cells from cord blood	blood
9	chr10:89820800-89823000	Weak transcription	Esophagus	oesophagus
10	chr10:89820800-89824600	Weak transcription	Spleen	Spleen
11	chr10:89820800-89829400	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr10:89820800-89832400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:89821000-89823800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:89821000-89823800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr10:89821400-89823800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:89821400-89828400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:89821600-89822400	Active TSS	Fetal Brain Male	brain
18	chr10:89821600-89823200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:89821600-89823200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:89821600-89823200	Enhancers	Right Atrium	heart
21	chr10:89821600-89823600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr10:89821600-89823600	Enhancers	Duodenum Mucosa	Duodenum
23	chr10:89821600-89824400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:89821600-89825400	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr10:89821600-89826400	Enhancers	Adipose Nuclei	Adipose
26	chr10:89821600-89826400	Enhancers	Fetal Lung	lung
27	chr10:89821600-89828000	Enhancers	Primary hematopoietic stem cells	blood
28	chr10:89821600-89830800	Enhancers	Fetal Thymus	thymus
29	chr10:89822000-89822400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:89822000-89822400	Enhancers	HepG2	liver
31	chr10:89822000-89823000	Flanking Active TSS	GM12878-XiMat	blood
32	chr10:89822000-89823200	Enhancers	Psoas Muscle	Psoas
33	chr10:89822000-89823200	Enhancers	Right Ventricle	heart
34	chr10:89822000-89823400	Enhancers	Left Ventricle	heart
35	chr10:89822000-89823400	Enhancers	NH-A	brain
36	chr10:89822000-89823600	Enhancers	Placenta	Placenta
37	chr10:89822000-89825400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr10:89822000-89825600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:89822000-89826000	Enhancers	Liver	Liver
40	chr10:89822000-89828200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr10:89822000-89828400	Enhancers	Thymus	Thymus
42	chr10:89822000-89829600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr10:89822200-89822400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:89822200-89822400	Enhancers	Aorta	Aorta
45	chr10:89822200-89822800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:89822200-89823000	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr10:89822200-89823000	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr10:89822200-89823000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:89822200-89823200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:89822200-89823200	Enhancers	Muscle Satellite Cultured Cells	--

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