Variant report

Variant	rs11204754
Chromosome Location	chr1:150961254-150961255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150959117..150961837-chr1:150983073..150984965,2	MCF-7	breast:
2	chr1:150960670..150962808-chr1:150967016..150969330,2	K562	blood:
3	chr1:150960800..150962708-chr1:150979691..150981611,2	MCF-7	breast:
4	chr1:150952248..150956266-chr1:150957653..150962515,6	K562	blood:
5	chr1:150550279..150552687-chr1:150961065..150964316,4	MCF-7	breast:
6	chr1:150953952..150957205-chr1:150960731..150962515,4	K562	blood:
7	chr1:150948040..150949859-chr1:150959159..150961414,2	K562	blood:

Variant related genes	Relation type
ENSG00000143363	Chromatin interaction
ENSG00000143384	Chromatin interaction
ENSG00000143412	Chromatin interaction
ENSG00000143409	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11204752	0.81[AFR][1000 genomes]
rs11204756	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1722784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754211	0.92[YRI][hapmap]
rs4590677	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv1008496	chr1:150845827-150970656	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	nsv522317	chr1:150933723-150974162	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
5	nsv522840	chr1:150933723-151347746	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	169 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150952000-150968000	Weak transcription	Spleen	Spleen
2	chr1:150952600-150968000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:150954200-150969400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:150954800-150968000	Weak transcription	Fetal Kidney	kidney
5	chr1:150955000-150969400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr1:150955400-150969400	Weak transcription	Gastric	stomach
7	chr1:150955400-150970400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:150955400-150978800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:150955600-150967600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:150955600-150968200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:150955800-150967600	Weak transcription	Fetal Intestine Small	intestine
12	chr1:150956200-150969400	Weak transcription	Fetal Intestine Large	intestine
13	chr1:150957800-150967600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:150958000-150967600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:150958400-150967600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr1:150958600-150961400	Strong transcription	Liver	Liver
17	chr1:150959000-150969400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:150959200-150968000	Weak transcription	HepG2	liver
19	chr1:150959400-150967600	Weak transcription	Pancreas	Pancrea
20	chr1:150960600-150967600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr1:150960800-150961400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr1:150961000-150969400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:150961200-150961400	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr1:150961200-150966600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr1:150961200-150967400	Weak transcription	Primary T cells from cord blood	blood
26	chr1:150961200-150967600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr1:150961200-150968200	Weak transcription	Primary T cells fromperipheralblood	blood

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